PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113525001
Common NameGSBRNA2T00113525001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 199aa    MW: 22426.9 Da    PI: 5.1836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113525001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-16105155255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a+++ + kl+g
  GSBRNA2T00113525001 105 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDHEAFKLRG 155
                          7********.**********954..34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-30104164IPR001471AP2/ERF domain
PROSITE profilePS5103223.788105163IPR001471AP2/ERF domain
SMARTSM003802.6E-34105169IPR001471AP2/ERF domain
PfamPF008475.9E-10105155IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22105164IPR016177DNA-binding domain
CDDcd000181.34E-27105163No hitNo description
PRINTSPR003672.9E-12106117IPR001471AP2/ERF domain
PRINTSPR003672.9E-12145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904277Biological Processnegative regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MATIEEISDL EKHLFEDLMI PDGFMEDFVF DDAAFFSGLW SLEPLNQVPK QEPSSPVLDP  60
DSYVQEFLQM EAESSSSTTT TTTTSPEVET VSNRKRSKRA EETRHYRGVR RRPWGKFAAE  120
IRDPAKKGSR IWLGTFESDI DAARAYDHEA FKLRGRKAVL NFPLDAGKYD APVNSCRKRR  180
RTDVPEPQGT ATSNSSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28102164264ATERF1
3gcc_A2e-28102164264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180RKRRR
2176181RKRRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.142080.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113525001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9918480.0GU991848.1 Brassica napus AP2/ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136497.11e-146PREDICTED: ethylene-responsive transcription factor ERF107
SwissprotQ9FKG21e-107EF107_ARATH; Ethylene-responsive transcription factor ERF107
TrEMBLA0A078EJ941e-146A0A078EJ94_BRANA; BnaA03g40370D protein
TrEMBLM4D8X91e-146M4D8X9_BRARP; Uncharacterized protein
STRINGBra012939.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.11e-106ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]